{
  "_id": "6a1ee88db401979e73411ae0",
  "Package": "MultiNMix",
  "Title": "Multi-Species N-Mixture (MNM) Models with 'nimble'",
  "Version": "0.1.0",
  "Authors@R": "c(person(given = \"Niamh\",\nfamily = \"Mimnagh\",\nrole = c(\"aut\", \"cre\"),\nemail = \"niamhmimnagh@gmail.com\"),\nperson(given = \"Rafael\",\nfamily = \"de Andrade Moral\",\nrole = \"aut\"))",
  "Description": "Simulating data and fitting multi-species N-mixture models\nusing 'nimble'. Includes features for handling zero-inflation\nand temporal correlation, Bayesian inference, model\ndiagnostics, parameter estimation, and predictive checks.\nDesigned for ecological studies with zero-altered or\ntime-series data. Mimnagh, N., Parnell, A., Prado, E., & Moral,\nR. A. (2022) <doi:10.1007/s10651-022-00542-7>. Royle, J. A.\n(2004) <doi:10.1111/j.0006-341X.2004.00142.x>.",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "LazyData": "true",
  "URL": "https://github.com/niamhmimnagh/MultiNMix",
  "BugReports": "https://github.com/niamhmimnagh/MultiNMix/issues",
  "Config/pak/sysreqs": "libglpk-dev make libxml2-dev",
  "Repository": "https://niamhmimnagh.r-universe.dev",
  "Date/Publication": "2025-03-03 20:39:32 UTC",
  "RemoteUrl": "https://github.com/niamhmimnagh/multinmix",
  "RemoteRef": "HEAD",
  "RemoteSha": "e71f2d5a4c787badec7c8ec5e33c3acc538c9ae8",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-19 10:38:58 UTC",
    "User": "root"
  },
  "Author": "Niamh Mimnagh [aut, cre],\nRafael de Andrade Moral [aut]",
  "Maintainer": "Niamh Mimnagh <niamhmimnagh@gmail.com>",
  "MD5sum": "be7b7287eb9fbff6f89a403e71d308f4",
  "_user": "niamhmimnagh",
  "_type": "src",
  "_file": "MultiNMix_0.1.0.tar.gz",
  "_fileid": "2a74152e95b0a29fda8a42154766b9d21f5d30eac0d333a0036adc12526a9423",
  "_filesize": 247546,
  "_sha256": "2a74152e95b0a29fda8a42154766b9d21f5d30eac0d333a0036adc12526a9423",
  "_created": "2026-05-19T10:38:58.000Z",
  "_published": "2026-06-02T14:28:29.513Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79094339444,
      "time": 171,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7081239079"
    },
    {
      "job": 79094339939,
      "time": 226,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7081255928"
    },
    {
      "job": 79094339592,
      "time": 95,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7081217526"
    },
    {
      "job": 79094339935,
      "time": 122,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7081235711"
    },
    {
      "job": 79094338492,
      "time": 199,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7081180396"
    },
    {
      "job": 79094338727,
      "time": 147,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7360577594"
    },
    {
      "job": 79094339405,
      "time": 336,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7081286352"
    },
    {
      "job": 79094340431,
      "time": 367,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7081302433"
    },
    {
      "job": 79094339893,
      "time": 319,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7081279748"
    }
  ],
  "_buildurl": "https://github.com/r-universe/niamhmimnagh/actions/runs/26091776560",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/niamhmimnagh/multinmix",
  "_commit": {
    "id": "e71f2d5a4c787badec7c8ec5e33c3acc538c9ae8",
    "author": "Niamh Mimnagh <41552662+niamhmimnagh@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update README.md",
    "time": 1741034372
  },
  "_maintainer": {
    "name": "Niamh Mimnagh",
    "email": "niamhmimnagh@gmail.com",
    "login": "niamhmimnagh",
    "description": "Statistician, Data Scientist",
    "uuid": 41552662
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "nimble",
      "role": "Depends"
    },
    {
      "package": "R",
      "version": ">= 3.5",
      "role": "Depends"
    },
    {
      "package": "clusterGeneration",
      "role": "Imports"
    },
    {
      "package": "mvtnorm",
      "role": "Imports"
    },
    {
      "package": "extraDistr",
      "role": "Imports"
    },
    {
      "package": "rstan",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "abind",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "coda",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "niamhmimnagh",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "niamhmimnagh",
      "count": 28,
      "uuid": 41552662
    }
  ],
  "_userbio": {
    "uuid": 41552662,
    "type": "user",
    "name": "Niamh Mimnagh",
    "description": "Statistician, Data Scientist"
  },
  "_downloads": {
    "count": 156,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MultiNMix"
  },
  "_devurl": "https://github.com/niamhmimnagh/multinmix",
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MultiNMix.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/niamhmimnagh/multinmix",
  "_realowner": "niamhmimnagh",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2025-03-22"
    }
  ],
  "_exports": [
    "AIC",
    "BIC",
    "check_convergence",
    "density",
    "logLik",
    "MNM",
    "MNM_AR",
    "MNM_control",
    "MNM_fit",
    "MNM_Hurdle",
    "MNM_Hurdle_AR",
    "predictY",
    "simulateData",
    "tracePlot",
    "validate_all_priors",
    "validate_prior"
  ],
  "_datasets": [
    {
      "name": "birds",
      "title": "Birds Dataset - Subset of the North American Breeding Bird Survey Dataset",
      "object": "birds",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Route",
        "Year",
        "English_Common_Name",
        "Stop1",
        "Stop2",
        "Stop3",
        "Stop4",
        "Stop5",
        "Stop6",
        "Stop7",
        "Stop8",
        "Stop9",
        "Stop10"
      ],
      "rows": 600,
      "table": true,
      "tojson": true
    },
    {
      "name": "birds_ZI",
      "title": "Zero-Inflated Birds Dataset - Subset of the North American Breeding Bird Survey Dataset",
      "object": "birds_ZI",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Route",
        "Year",
        "English_Common_Name",
        "Stop1",
        "Stop2",
        "Stop3",
        "Stop4",
        "Stop5",
        "Stop6",
        "Stop7",
        "Stop8",
        "Stop9",
        "Stop10"
      ],
      "rows": 2880,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "AIC-MNM-method",
      "title": "AIC Method for \"MNM\" Class",
      "topics": [
        "AIC,MNM-method"
      ]
    },
    {
      "page": "BIC-MNM-method",
      "title": "BIC Method for \"MNM\" Class",
      "topics": [
        "BIC,MNM-method"
      ]
    },
    {
      "page": "birds",
      "title": "Birds Dataset - Subset of the North American Breeding Bird Survey Dataset",
      "topics": [
        "birds"
      ]
    },
    {
      "page": "birds_ZI",
      "title": "Zero-Inflated Birds Dataset - Subset of the North American Breeding Bird Survey Dataset",
      "topics": [
        "birds_ZI"
      ]
    },
    {
      "page": "check_convergence",
      "title": "Convergence Check Generic Function",
      "topics": [
        "check_convergence"
      ]
    },
    {
      "page": "check_convergence-MNM-method",
      "title": "Convergence Check for \"MNM\" Class",
      "topics": [
        "check_convergence,MNM-method"
      ]
    },
    {
      "page": "density-MNM-method",
      "title": "Density Plot Method for \"MNM\" Class",
      "topics": [
        "density,MNM-method"
      ]
    },
    {
      "page": "distribution_args",
      "title": "List of Valid Nimble Distributions and Their Arguments",
      "topics": [
        "distribution_args"
      ]
    },
    {
      "page": "logLik-MNM-method",
      "title": "Log-Likelihood Method for \"MNM\" Class",
      "topics": [
        "logLik,MNM-method"
      ]
    },
    {
      "page": "MNM",
      "title": "Fit a Multi-Species N-Mixture Model (MNM) using Nimble",
      "topics": [
        "MNM"
      ]
    },
    {
      "page": "MNM_AR",
      "title": "Fit a Multi-Species N-Mixture Model with AR-1 Using Nimble",
      "topics": [
        "MNM_AR"
      ]
    },
    {
      "page": "MNM_control",
      "title": "Generate Nimble Code for Multi-Species N-Mixture (MNM) Models",
      "topics": [
        "MNM_control"
      ]
    },
    {
      "page": "MNM_fit",
      "title": "Fit a Multi-Species N-Mixture (MNM) Model in Nimble",
      "topics": [
        "MNM_fit"
      ]
    },
    {
      "page": "MNM_Hurdle",
      "title": "Fit a Multi-Species N-Mixture Model with Hurdle Component using Nimble",
      "topics": [
        "MNM_Hurdle"
      ]
    },
    {
      "page": "MNM_Hurdle_AR",
      "title": "Fit a multi-species N-mixture (MNM) Hurdle-AR model using Nimble",
      "topics": [
        "MNM_Hurdle_AR"
      ]
    },
    {
      "page": "MNM-class",
      "title": "Multi-Species N-Mixture (MNM) Model Class",
      "topics": [
        "MNM-class"
      ]
    },
    {
      "page": "predictY",
      "title": "Predict Fitted Values for \"MNM\" Class",
      "topics": [
        "predictY",
        "predictY,MNM-method"
      ]
    },
    {
      "page": "simulateData",
      "title": "Simulate Data for Multi-Species N-Mixture Models",
      "topics": [
        "simulateData"
      ]
    },
    {
      "page": "tracePlot",
      "title": "Trace Plot Generic and Method for \"MNM\" Class",
      "topics": [
        "tracePlot",
        "tracePlot,MNM-method"
      ]
    },
    {
      "page": "validate_all_priors",
      "title": "Validate User-Specified Priors for Nimble Models",
      "topics": [
        "validate_all_priors"
      ]
    },
    {
      "page": "validate_prior",
      "title": "Validate User-Specified Prior for a Single Prior",
      "topics": [
        "validate_prior"
      ]
    }
  ],
  "_readme": "https://github.com/niamhmimnagh/multinmix/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "backports",
    "BH",
    "callr",
    "checkmate",
    "cli",
    "clusterGeneration",
    "coda",
    "cpp11",
    "desc",
    "distributional",
    "extraDistr",
    "farver",
    "generics",
    "ggplot2",
    "glue",
    "gridExtra",
    "gtable",
    "igraph",
    "inline",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "loo",
    "magrittr",
    "MASS",
    "Matrix",
    "matrixStats",
    "mvtnorm",
    "nimble",
    "numDeriv",
    "pillar",
    "pkgbuild",
    "pkgconfig",
    "posterior",
    "pracma",
    "processx",
    "ps",
    "QuickJSR",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "RcppParallel",
    "rlang",
    "rstan",
    "S7",
    "scales",
    "StanHeaders",
    "tensorA",
    "tibble",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "multinmix",
  "_universes": [
    "niamhmimnagh"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-19T10:41:35.000Z",
      "distro": "noble",
      "commit": "e71f2d5a4c787badec7c8ec5e33c3acc538c9ae8",
      "fileid": "be62a203e0c4e77a26e07b22a95ba67f031e8d71ccb2653781e7119650d16dd4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/niamhmimnagh/actions/runs/26091776560"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-19T10:42:24.000Z",
      "distro": "noble",
      "commit": "e71f2d5a4c787badec7c8ec5e33c3acc538c9ae8",
      "fileid": "c1e728548f61db10f373688da1ab185e6439699b2cc2c5a39f73876a92f22719",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/niamhmimnagh/actions/runs/26091776560"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-19T10:40:39.000Z",
      "commit": "e71f2d5a4c787badec7c8ec5e33c3acc538c9ae8",
      "fileid": "093dd5af709eb209d32aeeb29b85eebd4dde09b5344172feb169b8f1e01436d4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/niamhmimnagh/actions/runs/26091776560"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-19T10:41:25.000Z",
      "commit": "e71f2d5a4c787badec7c8ec5e33c3acc538c9ae8",
      "fileid": "ee70d75419ab26e78b220b05b7b2a5210176d5c65b9c732ebf2a6624f6eccddb",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/niamhmimnagh/actions/runs/26091776560"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-19T10:43:54.000Z",
      "commit": "e71f2d5a4c787badec7c8ec5e33c3acc538c9ae8",
      "fileid": "0c00f18120ef8cea633844330cc1ded196f3098f3a210952caf593fb5badb14f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/niamhmimnagh/actions/runs/26091776560"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-19T10:44:51.000Z",
      "commit": "e71f2d5a4c787badec7c8ec5e33c3acc538c9ae8",
      "fileid": "20d0c853adde464bd1a348ea7784618f9bc338a7dfff9027a96c612ae6ee9c8e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/niamhmimnagh/actions/runs/26091776560"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-19T10:43:39.000Z",
      "commit": "e71f2d5a4c787badec7c8ec5e33c3acc538c9ae8",
      "fileid": "b632b6fa32e7dacb08e0f69ae699c1354264be12fd59ae40a87687e8caa5a890",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/niamhmimnagh/actions/runs/26091776560"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-06-02T14:27:10.000Z",
      "commit": "e71f2d5a4c787badec7c8ec5e33c3acc538c9ae8",
      "fileid": "32c31ad4eb60a0330a191dfd54dcc46903c1d0ab252ebcfc5323456426b32e2f",
      "status": "success",
      "buildurl": "https://github.com/r-universe/niamhmimnagh/actions/runs/26091776560"
    }
  ]
}